ST Pipeline: an automated pipeline for spatial mapping of unique transcripts
نویسندگان
چکیده
منابع مشابه
MrBUMP: an automated pipeline for molecular replacement
A novel automation pipeline for macromolecular structure solution by molecular replacement is described. There is a special emphasis on the discovery and preparation of a large number of search models, all of which can be passed to the core molecular-replacement programs. For routine molecular-replacement problems, the pipeline automates what a crystallographer might do and its value is simply ...
متن کاملPseudoPipe: an automated pseudogene identification pipeline
MOTIVATION Mammalian genomes contain many 'genomic fossils' i.e. pseudogenes. These are disabled copies of functional genes that have been retained in the genome by gene duplication or retrotransposition events. Pseudogenes are important resources in understanding the evolutionary history of genes and genomes. RESULTS We have developed a homology-based computational pipeline ('PseudoPipe') th...
متن کاملHal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data
The rapid increase in genomic and genome-scale data is resulting in unprecedented levels of discrete sequence data available for phylogenetic analyses. Major analytical impasses exist, however, prior to analyzing these data with existing phylogenetic software. Obstacles include the management of large data sets without standardized naming conventions, identification and filtering of orthologous...
متن کاملTitle: A SIMPLE pipeline for mapping point mutations running title: Point mutations mapping pipeline
A forward genetic screen is one of the best methods for revealing the regulatory functions of genes. In plants, this technique is highly efficient since it is relatively easy to grow and screen the phenotypes of hundreds or thousands of individuals. The cost-efficiency and ease of data production afforded by next-generation sequencing techniques have created new opportunities for mapping induce...
متن کاملREdiii: a pipeline for automated structure solution.
High-throughput crystallographic approaches require integrated software solutions to minimize the need for manual effort. REdiii is a system that allows fully automated crystallographic structure solution by integrating existing crystallographic software into an adaptive and partly autonomous workflow engine. The program can be initiated after collecting the first frame of diffraction data and ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2017
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btx211